| Cowdenbeath FC v Morton FC 09/09/2006 | View match | |
| Forfar Athletic FC v Morton FC 23/09/2006 | View match | |
| Raith Rovers FC v Morton FC 14/10/2006 | View match | |
| Alloa Athletic FC v Morton FC 28/10/2006 | View match | |
| Stirling Albion FC v Morton FC 11/11/2006 | View match | |
| Brechin City FC v Morton FC 16/12/2006 | View match | |
| Ayr United FC v Morton FC 30/12/2006 | View match | |
| Peterhead v Morton FC 02/01/2007 | View match | |
| Cowdenbeath FC v Morton FC 27/01/2007 | View match | |
| Stranraer v Morton FC 24/02/2007 | View match | |
| Alloa Athletic FC v Morton FC 10/03/2007 | View match | |
| Stirling Albion FC v Morton FC 17/03/2007 | View match |